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In advance i greatly apretiate any knowledge you can share with me but ill get to the point
1. swapped from dx to ex transmission and putting in brand new 6 puck clutch.
2. when i finished i started car and it ran pushed in the clutch..no resistance but it disengaged and i put it in reverse. it grabbed really hard but it didnt kill it.
3. brother told me to bleed clutch. tryed to for over an hour would not develop enough pressure to disengage the clutch
realised i forgot my tranny ground and ran it for about 5 minutes.
4 car died i fixed the tranny ground and now it wont run. trys to start but wont run.
5 battery lights flickers.

please help me diagnose and fix these problems. this has went from a 2 day fun learning experience to my whole car dying.

 
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Did you remember to put in brake fluid to the master and slave cylinder, clutch reservoir?

 
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Yes, lol i went through almost an entire bottle of DOT3 and today my car ran but stopped when it warmed up. now i think it isnt the alternator. it dies as soon as it reaches operating temp

 
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Does it have spark when it stops running?