Its possible, and very likely to keep it running on pump gas.
I'd say your build price is going to go over budget- like you said, an ITB and custom header is that much.
You might want to look into portflowing, to be on top of whatever fabericators you choose.
With a stage three cam, it'll be rough, but do able.
If you switch to a manaul, you might have to grab a new clutch and flywheel down the line to handle the power (if applicaple). Plus, you can save some weight on thoes components = more useable power to the wheels.
Its a good idea to grab the spare engine, I might have to be on the look out for a new block now!
I picked up the stage 2 a2 cam, crower valve springs and ti retainers already. I havent installed yet.
Your going to need to run a stand alone ems. I'm going to run hondata, but you could pick aem or whatever you want. So dont go grabbing the next civic ecu that you find.
As far as the valves... (you knew I would haunt you on this) Are you planning on running +.5mm on both intake and exhaust side? What about coated vs non coated / stainless? How did you come to this conclusion? What research do you have to back this decision up?
With the camshaft and the valve springs, you can push the redline up for a more useable power band. You'd then be good to 9,000 RPM redline, or at least thats what crower says. And no, you cant change the redline or the fuel mixture with the stock ecu. Standalone for the win... $1k+
Other then that, sounds pretty good. We'll be the only two people doing an NA build. I think I'm going to have to push mine off till next summer too. I dont want to have to slop it together now and pay the price later.
Words of wisdom... your going to need a new gasket pack- you can buy it from honda directly, or you can grab one off ebay... I got mine off ebay, from the same dude as speedfoos. It looks to be top quality. Many people say dont run the head gasket, or the valve seals... but the look identical in every way to the stockers, and I havent heard any problems from anyone about these guys. They are shipped directly from japan, suprisingly- how do I know... kuz of the japanese sheet of newspaper that was packed in with it to protect it. I also had to grab new valve guides. From the stealership they are ~$160ish, shipped from majestic, they are $105ish. Technically I didnt need to do this, but when your building a used motor, you dont know where its been, but you know where you want it to go... might as well be on the safe side. With oversized valves, this eliminates the need for that paste and grind concept.